Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28309 | 5' | -53.5 | NC_005905.1 | + | 19962 | 0.92 | 0.02578 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 19897 | 0.92 | 0.02578 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 49321 | 0.92 | 0.028193 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 49456 | 0.91 | 0.030828 |
Target: 5'- uAUCAAaUCUGGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 17824 | 0.96 | 0.014598 |
Target: 5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 19852 | 0.94 | 0.02155 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 19742 | 0.92 | 0.02578 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 17145 | 0.86 | 0.070402 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 19632 | 0.94 | 0.02155 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 21844 | 0.86 | 0.072483 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGAaCCAAg -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUcGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 19787 | 0.92 | 0.02578 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 20137 | 0.92 | 0.02578 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 17714 | 0.92 | 0.02578 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 49411 | 0.92 | 0.028193 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 49186 | 0.92 | 0.028193 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 49051 | 0.92 | 0.028193 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 49276 | 1.04 | 0.004249 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 22116 | 0.96 | 0.013748 |
Target: 5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 20197 | 0.94 | 0.02155 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28309 | 5' | -53.5 | NC_005905.1 | + | 20027 | 0.94 | 0.02155 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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