miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28309 5' -53.5 NC_005905.1 + 19677 0.68 0.713976
Target:  5'- uAUCGAGUCcAGGUCGuCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCcGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 19588 0.83 0.118206
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaucUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17255 0.84 0.091382
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 49276 1.04 0.004249
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17585 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 22205 0.72 0.502615
Target:  5'- aAUCAAGauguccaaauuuuaUCUagcccAGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGUUC--------------AGA-----UCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17210 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17320 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 22026 0.74 0.406007
Target:  5'- uAUCGAGUCUAGuuCGGUUUGAaCCAAg -3'
miRNA:   3'- -UAGUUCAGAUCugGCCGAACUcGGUU- -5'
28309 5' -53.5 NC_005905.1 + 20072 0.82 0.132349
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17649 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17540 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17779 0.69 0.692181
Target:  5'- uAUCGAaUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUcAGaUCUGGCCGAACUcGGUU- -5'
28309 5' -53.5 NC_005905.1 + 19523 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17365 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17430 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 21799 0.82 0.136122
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAAcUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 21744 0.83 0.10548
Target:  5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUCAgAUCUGGCCGAACUCGGUu -5'
28309 5' -53.5 NC_005905.1 + 17475 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17931 0.73 0.474628
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagUUCAGaUCuGGCCGAACUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.