Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28310 | 3' | -60 | NC_005905.1 | + | 20060 | 0.66 | 0.612076 |
Target: 5'- -gUCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 20017 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19952 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19887 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19842 | 0.73 | 0.229077 |
Target: 5'- aGACCGGCUUGGGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19777 | 0.79 | 0.097853 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19732 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19622 | 0.73 | 0.246508 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGc -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19577 | 0.72 | 0.271442 |
Target: 5'- aGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17859 | 0.69 | 0.426136 |
Target: 5'- aGCuCGGCUUGuGCCGAgUuAGCUUCGa -3' miRNA: 3'- cUG-GCCGAACuCGGCUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17814 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17704 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17530 | 0.66 | 0.601768 |
Target: 5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17420 | 0.66 | 0.601768 |
Target: 5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17310 | 0.66 | 0.601768 |
Target: 5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17243 | 0.77 | 0.137876 |
Target: 5'- -cCCGGCUUGGGCCGAgUuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGCUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11818 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11753 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11688 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11623 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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