miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 3' -60 NC_005905.1 + 11818 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17243 0.77 0.137876
Target:  5'- -cCCGGCUUGGGCCGAgUuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGCUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17310 0.66 0.601768
Target:  5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17420 0.66 0.601768
Target:  5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17530 0.66 0.601768
Target:  5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17704 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17814 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17859 0.69 0.426136
Target:  5'- aGCuCGGCUUGuGCCGAgUuAGCUUCGa -3'
miRNA:   3'- cUG-GCCGAACuCGGCUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19577 0.72 0.271442
Target:  5'- aGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19622 0.73 0.246508
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGc -5'
28310 3' -60 NC_005905.1 + 19732 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19777 0.79 0.097853
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19842 0.73 0.229077
Target:  5'- aGACCGGCUUGGGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19887 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19952 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 20017 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 20060 0.66 0.612076
Target:  5'- -gUCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 20127 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 20187 0.8 0.08333
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 21736 0.72 0.277984
Target:  5'- aGGCCGGCUUGAGCCGuugaGgUGGGUCaCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGC----UgGCUCGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.