Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28310 | 5' | -53.7 | NC_005905.1 | + | 8724 | 0.74 | 0.422061 |
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Target: 5'- -cCGAGUCcaaACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaucUGGCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 9052 | 0.74 | 0.431535 |
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Target: 5'- -cCGAGUCcAGGUCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17931 | 0.73 | 0.501101 |
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Target: 5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3' miRNA: 3'- uaGU-UCAGAUCUGGCCGAACUCggCU- -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17430 | 0.7 | 0.640506 |
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Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17320 | 0.7 | 0.640506 |
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Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17540 | 0.7 | 0.640506 |
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Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17210 | 0.7 | 0.640506 |
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Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 22026 | 0.7 | 0.640506 |
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Target: 5'- uAUCGAGUCUAGuuCGGUUUGAaCCa- -3' miRNA: 3'- -UAGUUCAGAUCugGCCGAACUcGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17931 | 0.69 | 0.716203 |
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Target: 5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3' miRNA: 3'- uagUUCAGaUCuGGCCGAACUCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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