miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 5' -53.7 NC_005905.1 + 19787 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19852 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19897 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19962 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20027 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20072 0.78 0.248169
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20137 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20197 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 21744 0.85 0.095943
Target:  5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUCAgAUCUGGCCGAACUCGGCu -5'
28310 5' -53.7 NC_005905.1 + 21799 0.78 0.254607
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAAcUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 21844 0.82 0.141759
Target:  5'- -cCGAGUCUAGGCCGGCUUGAaCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 21889 0.93 0.02773
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 21934 0.93 0.02773
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 21979 0.93 0.02773
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 22026 0.7 0.640506
Target:  5'- uAUCGAGUCUAGuuCGGUUUGAaCCa- -3'
miRNA:   3'- -UAGUUCAGAUCugGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 22069 0.9 0.045526
Target:  5'- -cCGAGUUUAGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 22116 0.93 0.028554
Target:  5'- uAUCGAGUCUAGGCCGGUUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 22205 0.76 0.348508
Target:  5'- aAUCAAGauguccaaauuuuaUCUagcccAGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGUUC--------------AGA-----UCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49051 0.95 0.018384
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49096 1 0.008286
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.