miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 5' -53.7 NC_005905.1 + 11810 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17145 0.9 0.045526
Target:  5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17210 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17255 0.88 0.059059
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17320 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17365 0.75 0.38545
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17430 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17475 0.75 0.38545
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17540 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17585 0.75 0.38545
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17649 0.76 0.318797
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 17714 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17824 0.92 0.030275
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17869 0.81 0.176239
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUCAGAUCuGGCCGAACuCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17931 0.69 0.716203
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3'
miRNA:   3'- uagUUCAGaUCuGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17931 0.73 0.501101
Target:  5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uaGU-UCAGAUCUGGCCGAACUCggCU- -5'
28310 5' -53.7 NC_005905.1 + 19523 0.76 0.318797
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 19588 0.79 0.223757
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaucUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19632 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19742 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.