miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 5' -53.7 NC_005905.1 + 17145 0.9 0.045526
Target:  5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 22069 0.9 0.045526
Target:  5'- -cCGAGUUUAGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 9005 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 8786 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20137 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19962 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19897 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19787 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19742 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17714 0.89 0.05262
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17255 0.88 0.059059
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 8943 0.86 0.078662
Target:  5'- -cCGAGUCcAGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11680 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11810 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11745 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11095 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11225 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11290 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11485 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 11550 0.86 0.08567
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.