miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 11829 0.85 0.257661
Target:  5'- gGCCAAGCUAGCUUCGAUAAGUa---- -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAgaguu -5'
28312 3' -47.5 NC_005905.1 + 11699 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11764 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8743 0.99 0.037111
Target:  5'- gGCCAAGCUAGCUUCGAC-AAUCUCAAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGuUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8962 0.99 0.039458
Target:  5'- aGCCAAGCUAGCUUCGACAAA-CUCAAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUaGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8698 0.97 0.048876
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8807 0.97 0.048876
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 9026 0.97 0.048876
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 11050 0.92 0.11005
Target:  5'- aCCAcGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- cGGUuCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11634 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11569 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11504 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8852 1.09 0.008658
Target:  5'- gGCCAAGCUAGCUUCGACAGAUCUCAAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 9071 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11114 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11179 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11244 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11309 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11374 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11439 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.