Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28312 | 3' | -47.5 | NC_005905.1 | + | 8589 | 0.73 | 0.829935 |
Target: 5'- aCCGAuuUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- cGGUUcgAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8633 | 1.09 | 0.008658 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCAAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8698 | 0.97 | 0.048876 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8743 | 0.99 | 0.037111 |
Target: 5'- gGCCAAGCUAGCUUCGAC-AAUCUCAAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGuUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8780 | 0.71 | 0.911262 |
Target: 5'- aGCCGGGCUGGacUCGAUAAaccuaaucuuAUCUCAu -3' miRNA: 3'- -CGGUUCGAUCgaAGCUGUU----------UAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8807 | 0.97 | 0.048876 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8852 | 1.09 | 0.008658 |
Target: 5'- gGCCAAGCUAGCUUCGACAGAUCUCAAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8917 | 0.79 | 0.510932 |
Target: 5'- gGCaGAGUUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGgUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8962 | 0.99 | 0.039458 |
Target: 5'- aGCCAAGCUAGCUUCGACAAA-CUCAAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUaGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8999 | 0.68 | 0.973673 |
Target: 5'- aGCCGGGCUGGacUCGAUAaaccuAAUCUUAu -3' miRNA: 3'- -CGGUUCGAUCgaAGCUGU-----UUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 9026 | 0.97 | 0.048876 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 9071 | 1.08 | 0.009505 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 10756 | 0.68 | 0.976546 |
Target: 5'- aUUGAGUUAGCUUCGACGAAauuaUCAc -3' miRNA: 3'- cGGUUCGAUCGAAGCUGUUUag--AGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11050 | 0.92 | 0.11005 |
Target: 5'- aCCAcGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- cGGUuCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11114 | 1.05 | 0.014689 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11179 | 1.05 | 0.014689 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11244 | 1.05 | 0.014689 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11309 | 1.05 | 0.014689 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11374 | 1.05 | 0.014689 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11439 | 1.05 | 0.014689 |
Target: 5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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