Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28312 | 3' | -47.5 | NC_005905.1 | + | 21915 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 21960 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22004 | 0.86 | 0.224942 |
Target: 5'- aCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- cGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22050 | 0.93 | 0.092119 |
Target: 5'- aGCCAAGUUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22095 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22140 | 0.92 | 0.097765 |
Target: 5'- gGCCAAGUUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22194 | 0.7 | 0.935742 |
Target: 5'- gGCCAAGCcGGUUUaaauaCGACAAAUC-CAGg -3' miRNA: 3'- -CGGUUCGaUCGAA-----GCUGUUUAGaGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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