miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 17766 0.66 0.994087
Target:  5'- aGCCGAGCUAaacUCGAUAAaccuaaucguAUCUCAu -3'
miRNA:   3'- -CGGUUCGAUcgaAGCUGUU----------UAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17803 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17848 0.92 0.106849
Target:  5'- uGCCGAGUUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17906 0.81 0.407354
Target:  5'- uGUCAAGUUAGCUUUGACGAGUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17913 0.84 0.301941
Target:  5'- gGCCAAGCUAGCUcUGACAAAUCaCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAaGCUGUUUAGaGUU- -5'
28312 3' -47.5 NC_005905.1 + 19567 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19611 0.84 0.309867
Target:  5'- gGCCAAGCUAGCUUC-ACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGcUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19656 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19721 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19766 0.89 0.16061
Target:  5'- gGCCAAGCUAGCcUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGaAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19831 1.03 0.020028
Target:  5'- gGCCAAGUUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19876 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19941 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20006 0.95 0.064244
Target:  5'- gGCCAAGCUAGCUUCGACAAAUaUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAgAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20051 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 20116 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20176 1 0.033844
Target:  5'- gGCCAAGCUAGCcUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGaAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 21780 0.86 0.244129
Target:  5'- gGCCAAGUUAGCUUCGACGAAgcuUCGAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUag-AGUU- -5'
28312 3' -47.5 NC_005905.1 + 21824 0.87 0.207051
Target:  5'- aCCAAGUUAGCUUCGACAAGUUUUAc -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 21870 0.92 0.11005
Target:  5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.