miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28313 5' -43.2 NC_005905.1 + 8589 0.66 0.999995
Target:  5'- aCCGAuuUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUcgAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8634 0.99 0.122378
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCAAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 8699 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8744 0.92 0.279417
Target:  5'- gCCAAGCUAGCUUCGAc-AAUCUCAAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUauUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 8784 0.72 0.995257
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8808 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8853 0.99 0.122378
Target:  5'- gCCAAGCUAGCUUCGAcAGAUCUCAAc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 8893 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8920 0.7 0.998456
Target:  5'- -aGAGUUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- ggUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8963 0.87 0.482496
Target:  5'- gCCAAGCUAGCUUCGAcAAA-CUCAAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUaGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 9003 0.69 0.999692
Target:  5'- cCCAAGCcgGGCUggacUCGAUAaaccuAAUCUUAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAU-----UUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 9027 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 9072 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 9113 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 11050 1.04 0.064835
Target:  5'- aCCAcGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUuCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11115 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11180 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11245 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11310 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11375 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.