miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28313 5' -43.2 NC_005905.1 + 11440 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11505 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11570 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11635 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11700 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11765 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 11830 0.9 0.344538
Target:  5'- gCCAAGCUAGCUUCGAUAAGUa-CGGGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAgaGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17042 0.67 0.999943
Target:  5'- gCCGGGCUGGacUCGAUAaacauAAUCUUAu- -3'
miRNA:   3'- -GGUUCGAUCgaAGCUAU-----UUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17147 0.72 0.995257
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAacauaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17188 0.85 0.595375
Target:  5'- gCCAAGCUAGCUUCaacAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGcuaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17233 0.83 0.688491
Target:  5'- gCCGAGUUAGCUUCGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17257 0.66 0.999985
Target:  5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17298 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17343 0.78 0.896824
Target:  5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17367 0.66 0.999985
Target:  5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17408 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17453 0.78 0.896824
Target:  5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17477 0.66 0.999985
Target:  5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17518 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17563 0.78 0.896824
Target:  5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.