Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 11440 | 1.12 | 0.019868 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 11505 | 1.12 | 0.019868 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 11570 | 1.12 | 0.019868 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 11635 | 1.12 | 0.019868 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 11700 | 1.12 | 0.019868 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 11765 | 1.12 | 0.019868 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 11830 | 0.9 | 0.344538 |
Target: 5'- gCCAAGCUAGCUUCGAUAAGUa-CGGGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUAUUUAgaGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17042 | 0.67 | 0.999943 |
Target: 5'- gCCGGGCUGGacUCGAUAaacauAAUCUUAu- -3' miRNA: 3'- -GGUUCGAUCgaAGCUAU-----UUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17147 | 0.72 | 0.995257 |
Target: 5'- cCCAAGCcgGGCUggacUCGAUAAacauaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17188 | 0.85 | 0.595375 |
Target: 5'- gCCAAGCUAGCUUCaacAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGcuaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17233 | 0.83 | 0.688491 |
Target: 5'- gCCGAGUUAGCUUCGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17257 | 0.66 | 0.999985 |
Target: 5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17298 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17343 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17367 | 0.66 | 0.999985 |
Target: 5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17408 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17453 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17477 | 0.66 | 0.999985 |
Target: 5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17518 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17563 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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