Results 41 - 60 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17607 | 0.66 | 0.999995 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17627 | 0.99 | 0.122378 |
Target: 5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17692 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17757 | 0.99 | 0.122378 |
Target: 5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17763 | 0.68 | 0.999923 |
Target: 5'- aCAAGCcgAGCUaaacUCGAUAAaccuaaucguAUCUCAu- -3' miRNA: 3'- gGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17802 | 0.86 | 0.537923 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUUUAu- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17847 | 0.82 | 0.745105 |
Target: 5'- gCCGAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17907 | 0.72 | 0.994394 |
Target: 5'- gUCAAGUUAGCUUUGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 17912 | 0.71 | 0.99666 |
Target: 5'- gCCAAGCUAGCUcUGAcAAAUCaCGAu -3' miRNA: 3'- -GGUUCGAUCGAaGCUaUUUAGaGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19400 | 0.66 | 0.999985 |
Target: 5'- uCCAGGCUAGCUUgguccaagcCGGccUGGA-CUCGAu -3' miRNA: 3'- -GGUUCGAUCGAA---------GCU--AUUUaGAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19480 | 0.67 | 0.999959 |
Target: 5'- cCCAAGCcGGCUuggacUCGAUAAAauuUgUCGAa -3' miRNA: 3'- -GGUUCGaUCGA-----AGCUAUUU---AgAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19501 | 0.66 | 0.999989 |
Target: 5'- aCCAAGCUAGCcUgGAUAAAa------ -3' miRNA: 3'- -GGUUCGAUCGaAgCUAUUUagaguuc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19566 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19610 | 0.74 | 0.977043 |
Target: 5'- gCCAAGCUAGCUUCac-AAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGcuaUUUAG---AGUUC- -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19635 | 0.67 | 0.999959 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAAauuUgUCGAGg -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUUU---AgAGUUC- -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19655 | 0.88 | 0.440213 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19680 | 0.66 | 0.999995 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19720 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19765 | 0.78 | 0.881356 |
Target: 5'- gCCAAGCUAGCcUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGaAGCUaUUUAG---AGUUC- -5' |
|||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 19790 | 0.66 | 0.999995 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home