miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28313 5' -43.2 NC_005905.1 + 17607 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17627 0.99 0.122378
Target:  5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17692 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17757 0.99 0.122378
Target:  5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17763 0.68 0.999923
Target:  5'- aCAAGCcgAGCUaaacUCGAUAAaccuaaucguAUCUCAu- -3'
miRNA:   3'- gGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17802 0.86 0.537923
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAu- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17847 0.82 0.745105
Target:  5'- gCCGAGUUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17907 0.72 0.994394
Target:  5'- gUCAAGUUAGCUUUGAcGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17912 0.71 0.99666
Target:  5'- gCCAAGCUAGCUcUGAcAAAUCaCGAu -3'
miRNA:   3'- -GGUUCGAUCGAaGCUaUUUAGaGUUc -5'
28313 5' -43.2 NC_005905.1 + 19400 0.66 0.999985
Target:  5'- uCCAGGCUAGCUUgguccaagcCGGccUGGA-CUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAA---------GCU--AUUUaGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 19480 0.67 0.999959
Target:  5'- cCCAAGCcGGCUuggacUCGAUAAAauuUgUCGAa -3'
miRNA:   3'- -GGUUCGaUCGA-----AGCUAUUU---AgAGUUc -5'
28313 5' -43.2 NC_005905.1 + 19501 0.66 0.999989
Target:  5'- aCCAAGCUAGCcUgGAUAAAa------ -3'
miRNA:   3'- -GGUUCGAUCGaAgCUAUUUagaguuc -5'
28313 5' -43.2 NC_005905.1 + 19566 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 19610 0.74 0.977043
Target:  5'- gCCAAGCUAGCUUCac-AAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGcuaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 19635 0.67 0.999959
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAAauuUgUCGAGg -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUUU---AgAGUUC- -5'
28313 5' -43.2 NC_005905.1 + 19655 0.88 0.440213
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 19680 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 19720 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 19765 0.78 0.881356
Target:  5'- gCCAAGCUAGCcUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGaAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 19790 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.