Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 20050 | 0.88 | 0.440213 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19875 | 0.88 | 0.440213 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19655 | 0.88 | 0.440213 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17802 | 0.86 | 0.537923 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUUUAu- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17188 | 0.85 | 0.595375 |
Target: 5'- gCCAAGCUAGCUUCaacAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGcuaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 20005 | 0.84 | 0.642017 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUaUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAgAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17233 | 0.83 | 0.688491 |
Target: 5'- gCCGAGUUAGCUUCGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 22139 | 0.82 | 0.711413 |
Target: 5'- gCCAAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17298 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17408 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17518 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19566 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17692 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19720 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19940 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 20115 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17627 | 0.99 | 0.122378 |
Target: 5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17757 | 0.99 | 0.122378 |
Target: 5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17453 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 8893 | 0.66 | 0.999995 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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