miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28313 5' -43.2 NC_005905.1 + 21959 0.81 0.777639
Target:  5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8893 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 9113 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17453 0.78 0.896824
Target:  5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17563 0.78 0.896824
Target:  5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 19501 0.66 0.999989
Target:  5'- aCCAAGCUAGCcUgGAUAAAa------ -3'
miRNA:   3'- -GGUUCGAUCGaAgCUAUUUagaguuc -5'
28313 5' -43.2 NC_005905.1 + 19610 0.74 0.977043
Target:  5'- gCCAAGCUAGCUUCac-AAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGcuaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 17343 0.78 0.896824
Target:  5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 21914 0.81 0.777639
Target:  5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 22004 0.82 0.745105
Target:  5'- aCCAAGUUAGCUUCGAcGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17757 0.99 0.122378
Target:  5'- aCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 17912 0.71 0.99666
Target:  5'- gCCAAGCUAGCUcUGAcAAAUCaCGAu -3'
miRNA:   3'- -GGUUCGAUCGAaGCUaUUUAGaGUUc -5'
28313 5' -43.2 NC_005905.1 + 9003 0.69 0.999692
Target:  5'- cCCAAGCcgGGCUggacUCGAUAaaccuAAUCUUAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAU-----UUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 21824 0.81 0.788162
Target:  5'- aCCAAGUUAGCUUCGAcAAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 21869 0.81 0.777639
Target:  5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 8784 0.72 0.995257
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28313 5' -43.2 NC_005905.1 + 17847 0.82 0.745105
Target:  5'- gCCGAGUUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 22049 0.82 0.711413
Target:  5'- gCCAAGUUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28313 5' -43.2 NC_005905.1 + 21779 0.75 0.963998
Target:  5'- gCCAAGUUAGCUUCGAcgAAGcUUCGAc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUa-UUUaGAGUUc -5'
28313 5' -43.2 NC_005905.1 + 19765 0.78 0.881356
Target:  5'- gCCAAGCUAGCcUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGaAGCUaUUUAG---AGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.