Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28313 | 5' | -43.2 | NC_005905.1 | + | 8784 | 0.72 | 0.995257 |
Target: 5'- cCCAAGCcgGGCUggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17147 | 0.72 | 0.995257 |
Target: 5'- cCCAAGCcgGGCUggacUCGAUAAacauaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17907 | 0.72 | 0.994394 |
Target: 5'- gUCAAGUUAGCUUUGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19610 | 0.74 | 0.977043 |
Target: 5'- gCCAAGCUAGCUUCac-AAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGcuaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 21779 | 0.75 | 0.963998 |
Target: 5'- gCCAAGUUAGCUUCGAcgAAGcUUCGAc -3' miRNA: 3'- -GGUUCGAUCGAAGCUa-UUUaGAGUUc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17343 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17453 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17563 | 0.78 | 0.896824 |
Target: 5'- gCCGAGUUAGCUUUGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 19765 | 0.78 | 0.881356 |
Target: 5'- gCCAAGCUAGCcUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGaAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 21824 | 0.81 | 0.788162 |
Target: 5'- aCCAAGUUAGCUUCGAcAAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 21869 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 21914 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 21959 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 22094 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17847 | 0.82 | 0.745105 |
Target: 5'- gCCGAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 22004 | 0.82 | 0.745105 |
Target: 5'- aCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 22049 | 0.82 | 0.711413 |
Target: 5'- gCCAAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 22139 | 0.82 | 0.711413 |
Target: 5'- gCCAAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 17233 | 0.83 | 0.688491 |
Target: 5'- gCCGAGUUAGCUUCGAcAAAUUugaUCGAGa -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28313 | 5' | -43.2 | NC_005905.1 | + | 20005 | 0.84 | 0.642017 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUaUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAgAGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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