Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28319 | 3' | -55.8 | NC_005905.1 | + | 17195 | 0.7 | 0.561749 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcaacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcc-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17205 | 1.11 | 0.001005 |
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17254 | 0.69 | 0.636133 |
Target: 5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17305 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17315 | 1.11 | 0.001005 |
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17364 | 0.69 | 0.636133 |
Target: 5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17415 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17425 | 1.11 | 0.001005 |
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17474 | 0.69 | 0.636133 |
Target: 5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17525 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17535 | 0.96 | 0.011807 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17600 | 1.01 | 0.005407 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17634 | 0.67 | 0.7103 |
Target: 5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17665 | 0.92 | 0.022251 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGaUUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17699 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17710 | 0.87 | 0.049484 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUaaaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGAccaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17764 | 0.67 | 0.7103 |
Target: 5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 17820 | 0.69 | 0.604103 |
Target: 5'- aGCUUGGCCCAAaCCGGaCUGGaCUUu -3' miRNA: 3'- -CGAACCGGGUUcGGUUgGACCaGAGc -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 19408 | 0.96 | 0.011807 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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28319 | 3' | -55.8 | NC_005905.1 | + | 19473 | 0.96 | 0.011807 |
Target: 5'- aGCUUGGCCCAAGCCGGCUUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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