miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 11368 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11403 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11433 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11468 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11498 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11533 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11563 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11598 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11628 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11662 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11693 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11727 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11758 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11792 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11823 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgauaaguacgGGUgUUGu -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----------CCAgAGC- -5'
28319 3' -55.8 NC_005905.1 + 11857 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11922 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17034 0.75 0.306349
Target:  5'- ---cGGCUCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17095 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17144 0.8 0.1419
Target:  5'- ---cGGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.