miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 8627 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 8726 0.91 0.025684
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCaCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGaGC- -5'
28319 3' -55.8 NC_005905.1 + 8737 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 8791 0.92 0.021621
Target:  5'- aGCUUGGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUgGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8836 0.89 0.035181
Target:  5'- aGCUUGGCCCAAGCCggUUUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8846 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgacaGaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----CcAGAGc -5'
28319 3' -55.8 NC_005905.1 + 8900 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8945 1.01 0.005102
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9014 0.74 0.369644
Target:  5'- aGCUaacucuGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- -CGAac----CGGGUUCGGUUgGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9055 0.96 0.012153
Target:  5'- aGCUUGGCUCAAGCCGGCCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9065 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9120 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9165 1.02 0.004414
Target:  5'- aGCUUGGCCCAAGCCGACCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11108 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11173 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11208 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11238 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11273 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11303 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28319 3' -55.8 NC_005905.1 + 11338 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.