miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 49486 0.7 0.582849
Target:  5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3'
miRNA:   3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 22181 0.7 0.561749
Target:  5'- ----aGCCCAGGCCGGCUUGGg-UCGa -3'
miRNA:   3'- cgaacCGGGUUCGGUUGGACCagAGC- -5'
28319 3' -55.8 NC_005905.1 + 22075 0.68 0.689319
Target:  5'- ---cGaCCCAAGCCGGCCUGGgCUa- -3'
miRNA:   3'- cgaaCcGGGUUCGGUUGGACCaGAgc -5'
28319 3' -55.8 NC_005905.1 + 22002 0.73 0.413511
Target:  5'- aCUUGGCCCAAaCCGGCCUaGaCUCGa -3'
miRNA:   3'- cGAACCGGGUUcGGUUGGAcCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21957 0.77 0.221782
Target:  5'- aCUUGGCUCAAGCCGGCCUaaaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAccaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21868 0.85 0.071359
Target:  5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21823 0.85 0.071359
Target:  5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21778 0.85 0.071359
Target:  5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21733 0.75 0.306349
Target:  5'- aCUUGGUUCAAGCCGGCCUaGaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21688 0.71 0.499938
Target:  5'- aCUUGGCCaAAGCCGGCCUaaaCUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGUUGGAccaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21636 0.68 0.646814
Target:  5'- ---cGGCUCAAGCCGGCCUauaCUCGc -3'
miRNA:   3'- cgaaCCGGGUUCGGUUGGAccaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20182 0.75 0.299047
Target:  5'- gGCUUGGgCCAAGCUAGCCUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20122 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20082 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20022 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19954 0.94 0.015307
Target:  5'- aGCUagcUGGCCCAAGCCGACCUGGaCUCGa -3'
miRNA:   3'- -CGA---ACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19947 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19913 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19848 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19837 0.66 0.799923
Target:  5'- gGCUUGGgCCAAGUUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.