miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 11922 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11208 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11403 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11338 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11273 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11857 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11468 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11598 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11792 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11727 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 11662 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19518 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20082 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19913 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8791 0.92 0.021621
Target:  5'- aGCUUGGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUgGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17665 0.92 0.022251
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGaUUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8726 0.91 0.025684
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCaCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGaGC- -5'
28319 3' -55.8 NC_005905.1 + 19563 0.9 0.031383
Target:  5'- aGCUUGGCCCAAGaCGACCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCgGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8836 0.89 0.035181
Target:  5'- aGCUUGGCCCAAGCCggUUUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19739 0.89 0.039429
Target:  5'- aCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- cGAACCGGGUUCGGuuGGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.