miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 21636 0.68 0.646814
Target:  5'- ---cGGCUCAAGCCGGCCUauaCUCGc -3'
miRNA:   3'- cgaaCCGGGUUCGGUUGGAccaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17254 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17364 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17474 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17820 0.69 0.604103
Target:  5'- aGCUUGGCCCAAaCCGGaCUGGaCUUu -3'
miRNA:   3'- -CGAACCGGGUUcGGUUgGACCaGAGc -5'
28319 3' -55.8 NC_005905.1 + 49486 0.7 0.582849
Target:  5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3'
miRNA:   3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17195 0.7 0.561749
Target:  5'- gGCUUGGgCCAAGCUAGCUUcaacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcc-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 22181 0.7 0.561749
Target:  5'- ----aGCCCAGGCCGGCUUGGg-UCGa -3'
miRNA:   3'- cgaacCGGGUUCGGUUGGACCagAGC- -5'
28319 3' -55.8 NC_005905.1 + 17525 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17305 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17699 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17415 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19573 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19727 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19947 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20122 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9065 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 21688 0.71 0.499938
Target:  5'- aCUUGGCCaAAGCCGGCCUaaaCUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGUUGGAccaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 22002 0.73 0.413511
Target:  5'- aCUUGGCCCAAaCCGGCCUaGaCUCGa -3'
miRNA:   3'- cGAACCGGGUUcGGUUGGAcCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9014 0.74 0.369644
Target:  5'- aGCUaacucuGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- -CGAac----CGGGUUCGGUUgGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.