Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28319 | 5' | -55 | NC_005905.1 | + | 48928 | 0.84 | 0.094864 |
Target: 5'- -cCGAAGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- caGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 22036 | 0.84 | 0.097518 |
Target: 5'- uGUCGAAGCUAACUUGGCCaaagCAGGCCu- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGG----GUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49017 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49107 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49152 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 48972 | 0.83 | 0.111865 |
Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 49242 | 0.83 | 0.111865 |
Target: 5'- aUUGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 9234 | 0.8 | 0.172008 |
Target: 5'- -----uGCUAACUCuGCCCAAGCCGGg -3' miRNA: 3'- cagcuuCGAUUGAGcCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21902 | 0.8 | 0.181296 |
Target: 5'- cGUCGAAGCUAACUUGGUUCAAaCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUcGGCc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17027 | 0.78 | 0.223001 |
Target: 5'- ------aCUAACUCGGCUCAAGCCGGg -3' miRNA: 3'- cagcuucGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 18009 | 0.71 | 0.574226 |
Target: 5'- cGUCaAAGCUAACUugacagaaacCGGCCUgaacucgguuuAAGCCGGc -3' miRNA: 3'- -CAGcUUCGAUUGA----------GCCGGG-----------UUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17539 | 0.68 | 0.712128 |
Target: 5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3' miRNA: 3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17429 | 0.68 | 0.712128 |
Target: 5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3' miRNA: 3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17319 | 0.68 | 0.712128 |
Target: 5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3' miRNA: 3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17209 | 0.68 | 0.712128 |
Target: 5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3' miRNA: 3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19608 | 0.68 | 0.741948 |
Target: 5'- ---cAAGCUAGCuucacaaauuuuaUCGaGUCCAAGCCGGc -3' miRNA: 3'- cagcUUCGAUUG-------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 54451 | 0.67 | 0.772847 |
Target: 5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3' miRNA: 3'- -CAgCUUCGAU---------UGAGCCGGg-UUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17868 | 0.67 | 0.772847 |
Target: 5'- aUCGAGuuUAGCUCGGCUUguGCCGa -3' miRNA: 3'- cAGCUUcgAUUGAGCCGGGuuCGGCc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19763 | 0.67 | 0.779653 |
Target: 5'- ---cAAGCUAGCcucgacaaauuuuaUCGaGUCCAGGCCGGc -3' miRNA: 3'- cagcUUCGAUUG--------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 8810 | 0.67 | 0.807981 |
Target: 5'- ---cAAGCUAGCUucgacaaauuuuacCGaGUCCAGGCCGGc -3' miRNA: 3'- cagcUUCGAUUGA--------------GC-CGGGUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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