Results 41 - 60 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28319 | 5' | -55 | NC_005905.1 | + | 17195 | 0.98 | 0.010918 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17415 | 0.98 | 0.010918 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17240 | 0.96 | 0.014994 |
Target: 5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17350 | 0.96 | 0.014994 |
Target: 5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17460 | 0.96 | 0.014994 |
Target: 5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 21722 | 0.96 | 0.016347 |
Target: 5'- uGUCGAAGCUAACUUGGUUCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 21677 | 0.94 | 0.019993 |
Target: 5'- cGUCGAAGCUAACUUGGCCaAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGgUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17085 | 0.94 | 0.019993 |
Target: 5'- uGUUGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 21991 | 0.94 | 0.020576 |
Target: 5'- cGUCGAAGCUAACUUGGCCCAAaCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUcGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 19948 | 0.93 | 0.02308 |
Target: 5'- uGUCGAAGCUAGCU-GGCCCAAGCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAgCCGGGUUCGGCc -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17745 | 0.92 | 0.026636 |
Target: 5'- uGUCGAAGCUAACUCGGCaCAAGCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGgGUUCGGCc -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 21947 | 0.92 | 0.030731 |
Target: 5'- uGUCGAAGCU-ACUUGGCUCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAuUGAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 19553 | 0.89 | 0.043256 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGacgacCUGGa -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUC-----GGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 8691 | 0.88 | 0.049841 |
Target: 5'- uGUCGAAGCUAAaUCGGUCCAAGCCGu -3' miRNA: 3'- -CAGCUUCGAUUgAGCCGGGUUCGGCc -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 49062 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 49332 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 49287 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 49197 | 0.87 | 0.062453 |
Target: 5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 19399 | 0.87 | 0.064232 |
Target: 5'- aUCcAGGCUAGCUUGGUCCAAGCCGGc -3' miRNA: 3'- cAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
|||||||
28319 | 5' | -55 | NC_005905.1 | + | 17810 | 0.85 | 0.08731 |
Target: 5'- uGUCaGAGCUAGCUUGGCCCAAaCCGGa -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUcGGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home