miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 21677 0.94 0.019993
Target:  5'- cGUCGAAGCUAACUUGGCCaAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGgUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21722 0.96 0.016347
Target:  5'- uGUCGAAGCUAACUUGGUUCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17460 0.96 0.014994
Target:  5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17350 0.96 0.014994
Target:  5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17240 0.96 0.014994
Target:  5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17415 0.98 0.010918
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17305 0.98 0.010918
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17195 0.98 0.010918
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 9065 1 0.007946
Target:  5'- uGUCGAAGCUAGCUUGGCUCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17525 1.01 0.007286
Target:  5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9020 1.01 0.007286
Target:  5'- uGUCGAAGCUAACUCuGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGcCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17655 1.01 0.007286
Target:  5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9175 1.01 0.00649
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 11542 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11477 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11607 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11347 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11217 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11282 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11412 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.