Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28319 | 5' | -55 | NC_005905.1 | + | 17460 | 0.96 | 0.014994 |
Target: 5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17350 | 0.96 | 0.014994 |
Target: 5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17240 | 0.96 | 0.014994 |
Target: 5'- uGUCaAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17415 | 0.98 | 0.010918 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17305 | 0.98 | 0.010918 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17195 | 0.98 | 0.010918 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17655 | 1.01 | 0.007286 |
Target: 5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17525 | 1.01 | 0.007286 |
Target: 5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19663 | 1.05 | 0.003637 |
Target: 5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 20072 | 1.05 | 0.003432 |
Target: 5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 20012 | 1.06 | 0.003334 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17209 | 0.68 | 0.712128 |
Target: 5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3' miRNA: 3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19608 | 0.68 | 0.741948 |
Target: 5'- ---cAAGCUAGCuucacaaauuuuaUCGaGUCCAAGCCGGc -3' miRNA: 3'- cagcUUCGAUUG-------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 17868 | 0.67 | 0.772847 |
Target: 5'- aUCGAGuuUAGCUCGGCUUguGCCGa -3' miRNA: 3'- cAGCUUcgAUUGAGCCGGGuuCGGCc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19763 | 0.67 | 0.779653 |
Target: 5'- ---cAAGCUAGCcucgacaaauuuuaUCGaGUCCAGGCCGGc -3' miRNA: 3'- cagcUUCGAUUG--------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 22156 | 0.66 | 0.838188 |
Target: 5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3' miRNA: 3'- -CAGCUUCG---------------AUUG--------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 20132 | 0.66 | 0.854063 |
Target: 5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3' miRNA: 3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19957 | 0.66 | 0.854063 |
Target: 5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3' miRNA: 3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19892 | 0.66 | 0.854063 |
Target: 5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3' miRNA: 3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 8801 | 1.07 | 0.002569 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGg -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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