miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 17655 1.01 0.007286
Target:  5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17700 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17709 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17745 0.92 0.026636
Target:  5'- uGUCGAAGCUAACUCGGCaCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGgGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 17810 0.85 0.08731
Target:  5'- uGUCaGAGCUAGCUUGGCCCAAaCCGGa -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGGGUUcGGCC- -5'
28319 5' -55 NC_005905.1 + 17868 0.67 0.772847
Target:  5'- aUCGAGuuUAGCUCGGCUUguGCCGa -3'
miRNA:   3'- cAGCUUcgAUUGAGCCGGGuuCGGCc -5'
28319 5' -55 NC_005905.1 + 18009 0.71 0.574226
Target:  5'- cGUCaAAGCUAACUugacagaaacCGGCCUgaacucgguuuAAGCCGGc -3'
miRNA:   3'- -CAGcUUCGAUUGA----------GCCGGG-----------UUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19399 0.87 0.064232
Target:  5'- aUCcAGGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- cAGcUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19463 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19508 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19553 0.89 0.043256
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGacgacCUGGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUC-----GGCC- -5'
28319 5' -55 NC_005905.1 + 19608 0.68 0.741948
Target:  5'- ---cAAGCUAGCuucacaaauuuuaUCGaGUCCAAGCCGGc -3'
miRNA:   3'- cagcUUCGAUUG-------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19618 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19663 1.05 0.003637
Target:  5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19728 1.06 0.003146
Target:  5'- uGUCGAAGCUAACUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19763 0.67 0.779653
Target:  5'- ---cAAGCUAGCcucgacaaauuuuaUCGaGUCCAGGCCGGc -3'
miRNA:   3'- cagcUUCGAUUG--------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19773 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19838 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19892 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 19903 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.