miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 20072 1.05 0.003432
Target:  5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19663 1.05 0.003637
Target:  5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11282 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11347 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11477 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11412 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11217 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11607 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11671 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11736 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11801 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11542 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11931 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11866 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9175 1.01 0.00649
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 17525 1.01 0.007286
Target:  5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9020 1.01 0.007286
Target:  5'- uGUCGAAGCUAACUCuGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGcCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17655 1.01 0.007286
Target:  5'- uGUCGAAGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9065 1 0.007946
Target:  5'- uGUCGAAGCUAGCUUGGCUCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17415 0.98 0.010918
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.