miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 17429 0.68 0.712128
Target:  5'- aUCGAgaccaGGUUGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- cAGCU-----UCGAUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 20132 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 8846 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11801 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9175 1.01 0.00649
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 19957 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 11736 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19892 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 17709 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 11282 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8910 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19608 0.68 0.741948
Target:  5'- ---cAAGCUAGCuucacaaauuuuaUCGaGUCCAAGCCGGc -3'
miRNA:   3'- cagcUUCGAUUG-------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 22156 0.66 0.838188
Target:  5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3'
miRNA:   3'- -CAGCUUCG---------------AUUG--------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11542 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11866 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8801 1.07 0.002569
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 20072 1.05 0.003432
Target:  5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17745 0.92 0.026636
Target:  5'- uGUCGAAGCUAACUCGGCaCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGgGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 21991 0.94 0.020576
Target:  5'- cGUCGAAGCUAACUUGGCCCAAaCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUcGGCC- -5'
28319 5' -55 NC_005905.1 + 19948 0.93 0.02308
Target:  5'- uGUCGAAGCUAGCU-GGCCCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAgCCGGGUUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.