miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28320 5' -51.2 NC_005905.1 + 17525 0.91 0.062599
Target:  5'- uGUCGAAGCUAGCUUGGUCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17700 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19463 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19618 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19773 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19838 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 20012 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 20072 0.96 0.029225
Target:  5'- uGUCGAGGCUAGCUUGGCCcAAGCCGGu -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19663 0.96 0.031002
Target:  5'- uGUCGAGGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17590 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19728 0.97 0.026746
Target:  5'- uGUCGAAGCUAACUUGGCCcAAGCCGGu -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19903 0.97 0.026746
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGu -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17350 1.12 0.002777
Target:  5'- uGUCAAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGAUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17460 1.12 0.002777
Target:  5'- uGUCAAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGAUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17130 1.02 0.011647
Target:  5'- uGUCGAAGCUAACUCGGCCcAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 21677 0.97 0.025967
Target:  5'- cGUCGAAGCUAACUUGGCCaAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 21767 0.97 0.025967
Target:  5'- cGUCGAAGCUAACUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 21812 0.97 0.025967
Target:  5'- cGUCGAAGCUAACUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 21857 0.97 0.025967
Target:  5'- cGUCGAAGCUAACUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19508 0.97 0.026746
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGu -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.