Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28320 | 5' | -51.2 | NC_005905.1 | + | 17364 | 0.66 | 0.965789 |
Target: 5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3' miRNA: 3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 11217 | 0.94 | 0.040402 |
Target: 5'- aUCGAAGCUAGCUUGGCCcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 11347 | 0.94 | 0.040402 |
Target: 5'- aUCGAAGCUAGCUUGGCCcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 8801 | 0.98 | 0.021741 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGg -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 22156 | 0.67 | 0.918635 |
Target: 5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3' miRNA: 3'- -CAGUUUCG---------------AUUG--------------AGC-CGGAUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49050 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49320 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49410 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 9234 | 0.74 | 0.627674 |
Target: 5'- -----uGCUAACUCuGCCcAAGCCGGg -3' miRNA: 3'- caguuuCGAUUGAGcCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 9065 | 0.93 | 0.048165 |
Target: 5'- uGUCGAAGCUAGCUUGGCUcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 18009 | 0.84 | 0.173134 |
Target: 5'- cGUCAAAGCUAACUugacagaaacCGGCCUGaacucgguuuaAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGA----------GCCGGAU-----------UCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17868 | 0.71 | 0.767429 |
Target: 5'- aUCGAGuuUAGCUCGGCUUGuGCCGa -3' miRNA: 3'- cAGUUUcgAUUGAGCCGGAUuCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17474 | 0.66 | 0.965789 |
Target: 5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3' miRNA: 3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 9020 | 0.91 | 0.062599 |
Target: 5'- uGUCGAAGCUAACUCuGCCcAAGCCGGg -3' miRNA: 3'- -CAGUUUCGAUUGAGcCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17584 | 0.66 | 0.965789 |
Target: 5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3' miRNA: 3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49455 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUgGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 9175 | 0.92 | 0.055729 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCGa -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 11282 | 0.94 | 0.040402 |
Target: 5'- aUCGAAGCUAGCUUGGCCcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49365 | 0.67 | 0.924028 |
Target: 5'- aUCAAGuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49185 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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