miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28322 3' -55.8 NC_005905.1 + 19837 0.66 0.799923
Target:  5'- gGCUUGGgCCAAGUUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19772 0.67 0.761302
Target:  5'- gGCUUGGgCCAAGCUAGCCUcGa---- -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcCagagc -5'
28322 3' -55.8 NC_005905.1 + 17634 0.67 0.7103
Target:  5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17764 0.67 0.7103
Target:  5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 8846 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgacaGaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----CcAGAGc -5'
28322 3' -55.8 NC_005905.1 + 8627 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11173 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11628 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11563 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11433 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11238 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11368 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11108 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11303 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11498 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11693 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 11758 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28322 3' -55.8 NC_005905.1 + 22075 0.68 0.689319
Target:  5'- ---cGaCCCAAGCCGGCCUGGgCUa- -3'
miRNA:   3'- cgaaCcGGGUUCGGUUGGACCaGAgc -5'
28322 3' -55.8 NC_005905.1 + 11823 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgauaaguacgGGUgUUGu -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----------CCAgAGC- -5'
28322 3' -55.8 NC_005905.1 + 8737 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC----AGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.