miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 17710 1.12 0.00117
Target:  5'- aGCUUGGCCCAAGCCGGCCUAAACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19518 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19913 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 20082 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49116 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49026 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 48981 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17144 0.9 0.03823
Target:  5'- ---cGGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19954 0.91 0.032184
Target:  5'- aGCUagcUGGCCCAAGCCGaCCUGGACUCGa -3'
miRNA:   3'- -CGA---ACCGGGUUCGGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 22002 0.95 0.017056
Target:  5'- aCUUGGCCCAAaCCGGCCUAGACUCGa -3'
miRNA:   3'- cGAACCGGGUUcGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21688 0.95 0.016096
Target:  5'- aCUUGGCCaAAGCCGGCCUAAACUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19473 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGCUUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17665 1.02 0.005491
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGAUUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21957 1.02 0.00582
Target:  5'- aCUUGGCUCAAGCCGGCCUAAACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19739 1.01 0.006169
Target:  5'- aCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21733 0.97 0.011698
Target:  5'- aCUUGGUUCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8945 1.11 0.001205
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21843 0.66 0.81517
Target:  5'- ---cGaGUCUAGGCCGGCUUGAAC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 17195 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcaacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17305 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.