Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28323 | 3' | -55 | NC_005905.1 | + | 17525 | 0.67 | 0.787041 |
Target: 5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17535 | 1.06 | 0.002808 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17600 | 1.11 | 0.001277 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17646 | 0.7 | 0.620605 |
Target: 5'- ---cGaGUCCAGGCCGGCUUGGAC-Ca -3' miRNA: 3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17665 | 1.02 | 0.005491 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGAUUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17710 | 1.12 | 0.00117 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUAAACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17711 | 0.69 | 0.674241 |
Target: 5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3' miRNA: 3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17759 | 0.67 | 0.787041 |
Target: 5'- ---cGGCaCAAGCCGaGC-UAAACUCGa -3' miRNA: 3'- cgaaCCGgGUUCGGC-CGgAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17820 | 0.79 | 0.186217 |
Target: 5'- aGCUUGGCCCAAaCCGGaCUGGACUUu -3' miRNA: 3'- -CGAACCGGGUUcGGCCgGAUUUGAGc -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 17998 | 0.66 | 0.824193 |
Target: 5'- aCUUGaCagAAaCCGGCCUGAACUCGg -3' miRNA: 3'- cGAACcGggUUcGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 18044 | 0.67 | 0.777344 |
Target: 5'- cCUUccuCCCAAGCCaGCCUAGACUa- -3' miRNA: 3'- cGAAcc-GGGUUCGGcCGGAUUUGAgc -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19408 | 1.06 | 0.002808 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19473 | 1.06 | 0.002808 |
Target: 5'- aGCUUGGCCCAAGCCGGCUUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19508 | 0.7 | 0.60987 |
Target: 5'- gGCUUGGaCCAAGCUaGCCUGGAUa-- -3' miRNA: 3'- -CGAACCgGGUUCGGcCGGAUUUGagc -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19518 | 1.06 | 0.002808 |
Target: 5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19563 | 0.86 | 0.06565 |
Target: 5'- aGCUUGGCCCAAGaCGaCCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCgGCcGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19585 | 0.69 | 0.642095 |
Target: 5'- ---cGaGUCCAAGCCGGCUUGGGC-Ca -3' miRNA: 3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19628 | 1.11 | 0.001277 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19673 | 1.11 | 0.001277 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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28323 | 3' | -55 | NC_005905.1 | + | 19739 | 1.01 | 0.006169 |
Target: 5'- aCUUGGCCCAAGCCGGUCUGGACUCGa -3' miRNA: 3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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