miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 11468 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11533 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11598 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11662 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11727 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11792 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11857 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11922 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17034 0.84 0.089387
Target:  5'- ---cGGCUCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17095 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17144 0.9 0.03823
Target:  5'- ---cGGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17195 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcaacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17205 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17254 0.86 0.06565
Target:  5'- ---cGGCCUAAGCCGGgCUGAACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17305 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17315 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17364 0.86 0.06565
Target:  5'- ---cGGCCUAAGCCGGgCUGAACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17415 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17425 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17474 0.86 0.06565
Target:  5'- ---cGGCCUAAGCCGGgCUGAACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.