miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 21778 1.07 0.002357
Target:  5'- aCUUGGCCCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21733 0.97 0.011698
Target:  5'- aCUUGGUUCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21688 0.95 0.016096
Target:  5'- aCUUGGCCaAAGCCGGCCUAAACUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21636 0.87 0.056988
Target:  5'- ---cGGCUCAAGCCGGCCUAuACUCGc -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUuUGAGC- -5'
28323 3' -55 NC_005905.1 + 20182 0.72 0.504815
Target:  5'- gGCUUGGgCCAAGCUaGCCUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 20134 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 20082 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 20022 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19959 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19954 0.91 0.032184
Target:  5'- aGCUagcUGGCCCAAGCCGaCCUGGACUCGa -3'
miRNA:   3'- -CGA---ACCGGGUUCGGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19913 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19894 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19848 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19783 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19772 0.7 0.599153
Target:  5'- gGCUUGGgCCAAGCUaGCCUcGACa-- -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGAuUUGagc -5'
28323 3' -55 NC_005905.1 + 19739 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19739 1.01 0.006169
Target:  5'- aCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19673 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19628 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19585 0.69 0.642095
Target:  5'- ---cGaGUCCAAGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.