miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 49389 0.85 0.077725
Target:  5'- ---aGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49345 0.73 0.436082
Target:  5'- ---cGGCUCAAGCCGGUCcAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGaUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49300 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49255 0.85 0.075575
Target:  5'- ---cGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49210 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49161 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49116 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49075 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49026 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 48981 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 48940 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 22190 0.73 0.445577
Target:  5'- -gUUGGgCCAAGCCGGUUUAAAUaCGa -3'
miRNA:   3'- cgAACCgGGUUCGGCCGGAUUUGaGC- -5'
28323 3' -55 NC_005905.1 + 22181 0.72 0.494693
Target:  5'- ----aGCCCAGGCCGGCUUGGG-UCGa -3'
miRNA:   3'- cgaacCGGGUUCGGCCGGAUUUgAGC- -5'
28323 3' -55 NC_005905.1 + 22075 0.76 0.280243
Target:  5'- ---cGaCCCAAGCCGGCCUGGGCUa- -3'
miRNA:   3'- cgaaCcGGGUUCGGCCGGAUUUGAgc -5'
28323 3' -55 NC_005905.1 + 22047 0.75 0.356227
Target:  5'- aCUUGGCCaAAGCaGGCCUcGACUCa -3'
miRNA:   3'- cGAACCGGgUUCGgCCGGAuUUGAGc -5'
28323 3' -55 NC_005905.1 + 22002 0.95 0.017056
Target:  5'- aCUUGGCCCAAaCCGGCCUAGACUCGa -3'
miRNA:   3'- cGAACCGGGUUcGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21957 1.02 0.00582
Target:  5'- aCUUGGCUCAAGCCGGCCUAAACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21868 1.07 0.002357
Target:  5'- aCUUGGCCCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21843 0.66 0.81517
Target:  5'- ---cGaGUCUAGGCCGGCUUGAAC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 21823 1.07 0.002357
Target:  5'- aCUUGGCCCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.