miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 17710 1.12 0.00117
Target:  5'- aGCUUGGCCCAAGCCGGCCUAAACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8945 1.11 0.001205
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8900 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9120 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 20022 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19848 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19783 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19673 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19628 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17600 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21778 1.07 0.002357
Target:  5'- aCUUGGCCCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21823 1.07 0.002357
Target:  5'- aCUUGGCCCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21868 1.07 0.002357
Target:  5'- aCUUGGCCCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11208 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11468 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11273 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11598 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11792 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11662 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11727 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.