miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 11468 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11273 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11338 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11208 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11922 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19473 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGCUUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17535 1.06 0.002808
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19408 1.06 0.002808
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19518 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19913 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 20082 1.06 0.002808
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9055 1.06 0.002891
Target:  5'- aGCUUGGCUCAAGCCGGCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17665 1.02 0.005491
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGAUUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8836 1.02 0.005491
Target:  5'- aGCUUGGCCCAAGCCGGUUUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8791 1.02 0.005491
Target:  5'- aGCUUGGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21957 1.02 0.00582
Target:  5'- aCUUGGCUCAAGCCGGCCUAAACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8726 1.01 0.006169
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACaCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGaGC- -5'
28323 3' -55 NC_005905.1 + 19739 1.01 0.006169
Target:  5'- aCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9165 0.99 0.009272
Target:  5'- aGCUUGGCCCAAGCCGaCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21733 0.97 0.011698
Target:  5'- aCUUGGUUCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.