miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 19508 0.7 0.60987
Target:  5'- gGCUUGGaCCAAGCUaGCCUGGAUa-- -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGAUUUGagc -5'
28323 3' -55 NC_005905.1 + 19772 0.7 0.599153
Target:  5'- gGCUUGGgCCAAGCUaGCCUcGACa-- -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGAuUUGagc -5'
28323 3' -55 NC_005905.1 + 8944 0.7 0.577807
Target:  5'- ---cGaGUCCAGGCCGGCUUGAGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 20182 0.72 0.504815
Target:  5'- gGCUUGGgCCAAGCUaGCCUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 22181 0.72 0.494693
Target:  5'- ----aGCCCAGGCCGGCUUGGG-UCGa -3'
miRNA:   3'- cgaacCGGGUUCGGCCGGAUUUgAGC- -5'
28323 3' -55 NC_005905.1 + 22190 0.73 0.445577
Target:  5'- -gUUGGgCCAAGCCGGUUUAAAUaCGa -3'
miRNA:   3'- cgAACCgGGUUCGGCCGGAUUUGaGC- -5'
28323 3' -55 NC_005905.1 + 49345 0.73 0.436082
Target:  5'- ---cGGCUCAAGCCGGUCcAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGaUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 22047 0.75 0.356227
Target:  5'- aCUUGGCCaAAGCaGGCCUcGACUCa -3'
miRNA:   3'- cGAACCGGgUUCGgCCGGAuUUGAGc -5'
28323 3' -55 NC_005905.1 + 9234 0.76 0.294344
Target:  5'- uGCUaacucuGCCCAAGCCGGgCUAAAUUCa -3'
miRNA:   3'- -CGAac----CGGGUUCGGCCgGAUUUGAGc -5'
28323 3' -55 NC_005905.1 + 22075 0.76 0.280243
Target:  5'- ---cGaCCCAAGCCGGCCUGGGCUa- -3'
miRNA:   3'- cgaaCcGGGUUCGGCCGGAUUUGAgc -5'
28323 3' -55 NC_005905.1 + 17820 0.79 0.186217
Target:  5'- aGCUUGGCCCAAaCCGGaCUGGACUUu -3'
miRNA:   3'- -CGAACCGGGUUcGGCCgGAUUUGAGc -5'
28323 3' -55 NC_005905.1 + 49075 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49300 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49210 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 48940 0.81 0.142608
Target:  5'- ---cGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9014 0.83 0.111561
Target:  5'- aGCUaacucuGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- -CGAac----CGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17095 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17205 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17315 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5'
28323 3' -55 NC_005905.1 + 17425 0.83 0.102699
Target:  5'- aGCUUGGCCCAAGCCaaCCUGGuCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGccGGAUUuGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.