miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 17034 0.84 0.089387
Target:  5'- ---cGGCUCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49389 0.85 0.077725
Target:  5'- ---aGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49255 0.85 0.075575
Target:  5'- ---cGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17364 0.86 0.06565
Target:  5'- ---cGGCCUAAGCCGGgCUGAACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17474 0.86 0.06565
Target:  5'- ---cGGCCUAAGCCGGgCUGAACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19563 0.86 0.06565
Target:  5'- aGCUUGGCCCAAGaCGaCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCgGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17254 0.86 0.06565
Target:  5'- ---cGGCCUAAGCCGGgCUGAACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21636 0.87 0.056988
Target:  5'- ---cGGCUCAAGCCGGCCUAuACUCGc -3'
miRNA:   3'- cgaaCCGGGUUCGGCCGGAUuUGAGC- -5'
28323 3' -55 NC_005905.1 + 48981 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49026 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49116 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 49161 0.9 0.039341
Target:  5'- cGgUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CgAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17144 0.9 0.03823
Target:  5'- ---cGGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19954 0.91 0.032184
Target:  5'- aGCUagcUGGCCCAAGCCGaCCUGGACUCGa -3'
miRNA:   3'- -CGA---ACCGGGUUCGGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 22002 0.95 0.017056
Target:  5'- aCUUGGCCCAAaCCGGCCUAGACUCGa -3'
miRNA:   3'- cGAACCGGGUUcGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21688 0.95 0.016096
Target:  5'- aCUUGGCCaAAGCCGGCCUAAACUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 21733 0.97 0.011698
Target:  5'- aCUUGGUUCAAGCCGGCCUAGACUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9165 0.99 0.009272
Target:  5'- aGCUUGGCCCAAGCCGaCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 19739 1.01 0.006169
Target:  5'- aCUUGGCCCAAGCCGGUCUGGACUCGa -3'
miRNA:   3'- cGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8726 1.01 0.006169
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACaCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.