miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 8615 0.69 0.674241
Target:  5'- ---cGuGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8726 1.01 0.006169
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACaCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGaGC- -5'
28323 3' -55 NC_005905.1 + 8789 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8791 1.02 0.005491
Target:  5'- aGCUUGGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8834 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8836 1.02 0.005491
Target:  5'- aGCUUGGCCCAAGCCGGUUUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8900 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8944 0.7 0.577807
Target:  5'- ---cGaGUCCAGGCCGGCUUGAGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 8945 1.11 0.001205
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9008 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 9014 0.83 0.111561
Target:  5'- aGCUaacucuGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- -CGAac----CGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9055 1.06 0.002891
Target:  5'- aGCUUGGCUCAAGCCGGCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9065 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 9120 1.11 0.001277
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9165 0.99 0.009272
Target:  5'- aGCUUGGCCCAAGCCGaCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCcGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 9234 0.76 0.294344
Target:  5'- uGCUaacucuGCCCAAGCCGGgCUAAAUUCa -3'
miRNA:   3'- -CGAac----CGGGUUCGGCCgGAUUUGAGc -5'
28323 3' -55 NC_005905.1 + 11208 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11273 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11338 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 11403 1.06 0.002649
Target:  5'- aGCUUGGCCCAAGCCGGUCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.