Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 3' | -57.2 | NC_005905.1 | + | 11860 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11925 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17027 | 0.71 | 0.404616 |
Target: 5'- aCUAaCUcGGCUCAAGCCGGgcUGGACu -3' miRNA: 3'- -GAUcGAaCCGGGUUCGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17092 | 0.76 | 0.204874 |
Target: 5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17135 | 0.78 | 0.153263 |
Target: 5'- -aAGCUaacucGGCCCAAGCCGGgcUGGACu -3' miRNA: 3'- gaUCGAa----CCGGGUUCGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17197 | 0.66 | 0.669277 |
Target: 5'- uUGGCUUGGgCCAAGCUaGCUUcaACa -3' miRNA: 3'- gAUCGAACCgGGUUCGGcCGAAccUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17202 | 0.76 | 0.204874 |
Target: 5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17241 | 0.66 | 0.669277 |
Target: 5'- -cGGCUUGGgCCGAGUUaGCUUcGACa -3' miRNA: 3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17307 | 0.73 | 0.306142 |
Target: 5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3' miRNA: 3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17312 | 0.76 | 0.204874 |
Target: 5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17417 | 0.73 | 0.306142 |
Target: 5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3' miRNA: 3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17422 | 0.76 | 0.204874 |
Target: 5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17527 | 0.73 | 0.306142 |
Target: 5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3' miRNA: 3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17532 | 0.97 | 0.006523 |
Target: 5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17597 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17654 | 0.78 | 0.137616 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGACc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17662 | 0.94 | 0.011321 |
Target: 5'- gCUAGCUUGGUCCAAGCCGGCcUGGAUu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17707 | 0.86 | 0.041391 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCc----- -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaaccug -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17719 | 0.77 | 0.161677 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17797 | 0.78 | 0.146819 |
Target: 5'- gCUAGCUUcGacaaauuuuaucgaaUCCAGGCCGGCUUGGACc -3' miRNA: 3'- -GAUCGAAcC---------------GGGUUCGGCCGAACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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