miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 17417 0.73 0.306142
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 22181 0.73 0.284579
Target:  5'- -------aGCCCAGGCCGGCUUGGGu -3'
miRNA:   3'- gaucgaacCGGGUUCGGCCGAACCUg -5'
28324 3' -57.2 NC_005905.1 + 19760 0.75 0.219661
Target:  5'- gCUAGCcUcgacaaauuuuaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGaA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17092 0.76 0.204874
Target:  5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5'
28324 3' -57.2 NC_005905.1 + 17202 0.76 0.204874
Target:  5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5'
28324 3' -57.2 NC_005905.1 + 17312 0.76 0.204874
Target:  5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5'
28324 3' -57.2 NC_005905.1 + 17422 0.76 0.204874
Target:  5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5'
28324 3' -57.2 NC_005905.1 + 21908 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21953 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21998 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17719 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19792 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19902 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19967 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20142 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9000 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8781 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17135 0.78 0.153263
Target:  5'- -aAGCUaacucGGCCCAAGCCGGgcUGGACu -3'
miRNA:   3'- gaUCGAa----CCGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9032 0.78 0.152035
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGUCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17797 0.78 0.146819
Target:  5'- gCUAGCUUcGacaaauuuuaucgaaUCCAGGCCGGCUUGGACc -3'
miRNA:   3'- -GAUCGAAcC---------------GGGUUCGGCCGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.