miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 11478 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11413 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11543 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11348 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8924 0.7 0.457886
Target:  5'- uUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGaGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACcUG- -5'
28324 3' -57.2 NC_005905.1 + 49021 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 49156 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 48976 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 49111 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 17027 0.71 0.404616
Target:  5'- aCUAaCUcGGCUCAAGCCGGgcUGGACu -3'
miRNA:   3'- -GAUcGAaCCGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19650 0.71 0.401922
Target:  5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19870 0.71 0.401922
Target:  5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20013 0.71 0.386872
Target:  5'- -cGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 9015 0.71 0.378194
Target:  5'- -aAGCUaacucuGCCCAAGCCGGgcUGGACu -3'
miRNA:   3'- gaUCGAac----CGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8704 0.71 0.375617
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAAaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17841 0.72 0.367111
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 22133 0.72 0.3505
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20077 0.73 0.3212
Target:  5'- -aGGUUUaucGaGUCCAGGUCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17417 0.73 0.306142
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 17307 0.73 0.306142
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.