miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 11211 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11601 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11536 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11730 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19515 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19910 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20079 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17532 0.97 0.006523
Target:  5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19405 0.97 0.006523
Target:  5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9058 0.97 0.007116
Target:  5'- gCUAGCUUGGCUCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8794 0.94 0.010378
Target:  5'- gCUAGCUUGGCCCAAGCCGGgcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17662 0.94 0.011321
Target:  5'- gCUAGCUUGGUCCAAGCCGGCcUGGAUu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9168 0.9 0.022659
Target:  5'- gCUAGCUUGGCCCAAGCCGaCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCcGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19735 0.88 0.03109
Target:  5'- gCUAaCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17707 0.86 0.041391
Target:  5'- gCUAGCUUGGCCCAAGCCGGCc----- -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaaccug -5'
28324 3' -57.2 NC_005905.1 + 19605 0.83 0.064988
Target:  5'- gCUAGCUUcacaaauuuuaucGaGUCCAAGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA-------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17817 0.83 0.068946
Target:  5'- gCUAGCUUGGCCCAAaCCGGacUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUcGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8813 0.82 0.072319
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19955 0.81 0.086252
Target:  5'- gCUAGC-UGGCCCAAGCCGaCcUGGACu -3'
miRNA:   3'- -GAUCGaACCGGGUUCGGCcGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8595 0.8 0.103857
Target:  5'- uUAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.