miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 19470 1.09 0.000901
Target:  5'- gCUAGCUUGGCCCAAGCCGGCUUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8839 1.05 0.001813
Target:  5'- gCUAGCUUGGCCCAAGCCGGUUUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8729 1.03 0.002571
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACa -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9123 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8903 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8948 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20019 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19845 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17597 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19780 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19670 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19625 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11341 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11730 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11211 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11406 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11471 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11795 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20079 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19910 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.