miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 21819 0.79 0.120124
Target:  5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 17662 0.94 0.011321
Target:  5'- gCUAGCUUGGUCCAAGCCGGCcUGGAUu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19735 0.88 0.03109
Target:  5'- gCUAaCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17707 0.86 0.041391
Target:  5'- gCUAGCUUGGCCCAAGCCGGCc----- -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaaccug -5'
28324 3' -57.2 NC_005905.1 + 17817 0.83 0.068946
Target:  5'- gCUAGCUUGGCCCAAaCCGGacUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUcGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8813 0.82 0.072319
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19955 0.81 0.086252
Target:  5'- gCUAGC-UGGCCCAAGCCGaCcUGGACu -3'
miRNA:   3'- -GAUCGaACCGGGUUCGGCcGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8595 0.8 0.103857
Target:  5'- uUAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21774 0.79 0.120124
Target:  5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 19405 0.97 0.006523
Target:  5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17532 0.97 0.006523
Target:  5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20079 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17597 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19625 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19670 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19780 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19845 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20019 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19515 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19910 0.99 0.004602
Target:  5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.